Projects
Here, I present some of my software projects. I mostly work with R, Python, and Javascript. I also manage servers for websites and high performance computing applications.
Lately, I have been interested to work on interactive data browsers.
2026
Osteosarc.com
·25 words·1 min
An interactive portal for the openly shared genomics and imaging data from Sid Sijbrandij’s osteosarcoma tumor samples.
2023
hlabud: HLA genotype analysis in R
·137 words·1 min
An R package that turns IMGT/HLA sequence alignments into tidy matrices, ready for logistic regression, dimensionality reduction, and 3D structure visualization.
2020
Cell Guide: Navigate single-cell RNA-seq datasets in your web browser
·190 words·1 min
A browser-based viewer for single-cell RNA-seq datasets — explore UMAPs, gene expression, and per-cluster statistics with no installation or coding.
2019
Quickgene.net
·88 words·1 min
A small web tool that turns a messy list of genes or SNPs into a tidy, linked table of symbols and identifiers — paste a list, get clean annotations back.
2016
Immunogenomics.io
·106 words·1 min
Interactive data portal for the Raychaudhuri Lab — explore the primary bulk RNA-seq, single-cell RNA-seq, and mass cytometry data behind published immunogenomics studies.
ggrepel: Automatically Position Non-Overlapping Text Labels with 'ggplot2'
·106 words·1 min
An R package that extends ggplot2 with geoms that automatically position text labels so they don’t overlap each other, the data points, or the edges of the plot.
2015
CuSTEMized: one-of-a-kind personalized children's books
↗
↖
I help to maintain the server and website.
2014
SNPSEA: a SNP Set Enrichment algorithm to identify cell types, tissues and pathways affected by risk loci
·112 words·1 min
SNPSEA # SNPSEA is a single-nucleotide polymorphism (SNP) Set Enrichment Algorithm (SEA) to identify which cell types preferentially express the genes that are associated with a …
