Javascript
pubmed-pairs: Search PubMed for each pair of terms from two lists
·292 words·2 mins
Searching PubMed is my favorite way to find biomedical research about any topic. But sometimes I want to explore complicated queries. For example, how many papers have been …
Cell Guide: Navigate single-cell RNA-seq datasets in your web browser
·55 words·1 min
Navigate single-cell RNA-seq datasets in your web browser.
Try it at https://cell.guide
Display metadata on the UMAP figure Display gene expression on the UMAP figure Aggregate …
Quickgene.net
·19 words·1 min
Quickly turn a messy list of genes or SNPs into a tidy table with symbols, links, and identifiers.
https://quickgene.net
Make tidy variant tables with MyVariant.info and Tabulator
·140 words·1 min
We can use the MyVariant.info API and Tabulator to create a web page for making tidy tables with genomic variants.
Make tidy gene tables with MyGene.info and Tabulator
·139 words·1 min
Let’s use the MyGene.info API with the Tabulator JavaScript library by Oli Folkerd to create a simple web page for making tidy tables with information about genes. See how it …
Repeating pattern of colorful circles
·39 words·1 min
What happens if you move circles back and forth, and each one changes its color as it moves?
🌈 You end up with this groovy animation:
Full screen: circles
Barnsley fern
·26 words·1 min
🌿 A Javascript animation of the Barnsley Fern, inspired by Chaos Game - Numberphile.
Please, fork it on GitHub:
Immunogenomics.io
·36 words·1 min
View the primary genomics data from several biomedical research studies. I developed many of the data visualizations on this site with R and Javascript. You can view bulk RNA-seq, …
Autocomplete gene names with mygene.info and typeahead.js
·128 words·1 min
We can use mygene.info with typeahead.js to autocomplete gene names and retrieve every annotation you can think of (GO, Kegg, Ensembl, position, homologs, etc.). Try typing your …