Kamil Slowikowski
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2017

Make heatmaps in R

Color points by density with ggplot2

2015

Build bioinformatics pipelines with Snakemake

Compare distributions with box plots, not bar plots

Determine if a transcription factor is bound with CENTIPEDE

Print bigWig data for each region in a BED file

Run Picard tools and collate multiple metrics files

Get transcription factor target genes

Quickly aggregate your data with data.table in R

2014

featureCounts requires identical mate ids

Make ribosomal RNA intervals for Picard CollectRnaSeqMetrics

Join multiple PLINK dosage files into one file

Autocomplete gene names with mygene.info and typeahead.js

SNP Proxies

Benchmark the binomial probability mass function in Python

Create a quantile-quantile plot with ggplot2

How to ssh to a remote server without typing your password

2013

Count the number of coding base pairs in each Gencode gene

GTEx RNA-Seq Visualizations

0-based and 1-based genomic intervals, overlap and distance

1000 Genomes Allele Frequencies and Linkage Disequilibrium