Projects
Here, I present some of my software projects. I mostly work with R, Python, and Javascript. I also manage servers for websites and high performance computing applications.
Lately, I have been interested to work on interactive data browsers.
2023
hlabud: HLA genotype analysis in R
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hlabud provides methods to retrieve sequence alignment data from IMGTHLA and convert the data into convenient R matrices ready for downstream analysis. See the usage examples to …
2020
Cell Guide: Navigate single-cell RNA-seq datasets in your web browser
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Navigate single-cell RNA-seq datasets in your web browser.
Try it at https://cell.guide
Display metadata on the UMAP figure Display gene expression on the UMAP figure Aggregate …
2019
Quickgene.net
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Quickly turn a messy list of genes or SNPs into a tidy table with symbols, links, and identifiers.
https://quickgene.net
2016
Immunogenomics.io
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View the primary genomics data from several biomedical research studies. I developed many of the data visualizations on this site with R and Javascript. You can view bulk RNA-seq, …
ggrepel: Automatically Position Non-Overlapping Text Labels with 'ggplot2'
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ggrepel is an R package that provides geoms for ggplot2 to repel overlapping text labels:
geom_text_repel() geom_label_repel() Text labels repel away from each other, away from …
2015
CuSTEMized: one-of-a-kind personalized children's books
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I help to maintain the server and website.
2014
SNPSEA: a SNP Set Enrichment algorithm to identify cell types, tissues and pathways affected by risk loci
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SNPSEA # SNPSEA is a single-nucleotide polymorphism (SNP) Set Enrichment Algorithm (SEA) to identify which cell types preferentially express the genes that are associated with a …