Kamil Slowikowski
About Archive

GTEx RNA-Seq Visualizations

I created three visualizations of RNA-Seq data from the GTEx project (version 2013-03-21). They’re powered by JBrowse, the WashU Epigenome Browser, and canvasXpress.

0-based and 1-based genomic intervals, overlap and distance

Here, I describe two kinds of genomic intervals and include source code for testing overlap and calculating distance between intervals.

1000 Genomes Allele Frequencies and Linkage Disequilibrium

I prepared some files that you might find useful. Several members of my group use them. I’d be happy to hear what you do with my files. Please contact me if you have any questions.